Package org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.BySourceTerm
- java.lang.Object
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- org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
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- org.biojavax.bio.db.biosql.BioSQLFeatureFilter.BySourceTerm
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- All Implemented Interfaces:
Serializable
,FeatureFilter
,BioSQLFeatureFilter
- Enclosing interface:
- BioSQLFeatureFilter
public static final class BioSQLFeatureFilter.BySourceTerm extends BioSQLFeatureFilter.HibernateFeatureFilter
Construct one of these to filter features by source.- Since:
- 1.5
- Author:
- Matthew Pocock, Richard Holland
- See Also:
- Serialized Form
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Nested Class Summary
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Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools
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Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter
FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter
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Field Summary
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Fields inherited from class org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
and, conjunctAdd, conjunction, disjunctAdd, disjunction, eq, ge, le, not, or
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Fields inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter
all, none
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Fields inherited from interface org.biojava.bio.seq.FeatureFilter
leaf, top_level
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Constructor Summary
Constructors Constructor Description BySourceTerm(ComparableTerm sourceTerm)
Create a BySourceTerm filter that filters in all features with sourceTerm fields equal to source.
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description boolean
accept(Feature f)
Returns true if the feature has a matching source property.Object
asCriterion()
This method returns a Hibernate Criterion object that can be used to query the database.boolean
equals(Object o)
ComparableTerm
getSourceTerm()
int
hashCode()
String
toString()
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Methods inherited from class org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
criterionAliasMap
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Constructor Detail
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BySourceTerm
public BySourceTerm(ComparableTerm sourceTerm)
Create a BySourceTerm filter that filters in all features with sourceTerm fields equal to source.- Parameters:
sourceTerm
- the Term to match sourceTerm fields against
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Method Detail
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getSourceTerm
public ComparableTerm getSourceTerm()
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accept
public boolean accept(Feature f)
Returns true if the feature has a matching source property.- Parameters:
f
- the Feature to evaluate- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
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asCriterion
public Object asCriterion()
Description copied from interface:BioSQLFeatureFilter
This method returns a Hibernate Criterion object that can be used to query the database.- Returns:
- a Hibernate Criterion object representing this filter.
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